All modules for which code is available
hgflask.client
hgflask.server
HiGlass
Tutorial
Prerequisites
Quickly viewing a dataset
Running HiGlass locally
Adding data
Viewing data in the client
Jupyter Notebooks
Installation
Usage
Python API
hgflask
hgflask.client
Javascript API
Overview
API Functions
Data Preparation
Bed Files
Bedpe-like Files
BedGraph files
bigWig files
Gene Annotation Tracks
Hitile files
Cooler files
Multivec Files
Epilogos Data (multivec)
Other Data (multivec)
Track Types
Linking value scales
Bed-like
Gene Annotations
Heatmap
Rotated 2D Heatmap
2D Rectangle Domain
Horizontal 2D Rectangle Domain
Line
Bar
Point
1D Heatmap
Chromosome Labels
Chromosome Grid
Stacked Bars
Multiple Lines
Multiple Bar Charts
1D Annotations
Views
Genome Position Search Box
View synchronization
Server
Configuration
Development
Testing
API
Docker
Running locally
Running remotely
View Configs
Show a specific genomic location
Upload a viewconf to the server
Developer Documentation
Viewer
Adding views
Closing and resizing views
Replacing Tracks
Synchronizing zoom and location
Adding cross sections
Related Topics
Documentation overview
Quick search